org.jaga.reproduction.proteinLocation
Class PolypeptidePatternElongation

java.lang.Object
  org.jaga.reproduction.Mutation
      org.jaga.reproduction.proteinLocation.PolypeptidePatternElongation

All Implemented Interfaces:

ReproductionAlgorithm

public class PolypeptidePatternElongation

extends Mutation

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:

JAGA public release 1.0 beta

Author:

Greg Paperin (greg@jaga.org)

Constructor Summary

PolypeptidePatternElongation()

PolypeptidePatternElongation(double mutProb)

Method Summary

java.lang.Class	getApplicableClass() Returns the class of individuals handled by this reproduction algorithm.
Individual[]	reproduce(Individual[] parents, GAParameterSet params) Reproduces the specified individuals.
Individual	reproduce(Individual parent, GAParameterSet params)

Methods inherited from class org.jaga.reproduction.Mutation

getMutationProbability, getRequiredNumberOfParents, setMutationProbability

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PolypeptidePatternElongation

public PolypeptidePatternElongation()

PolypeptidePatternElongation

public PolypeptidePatternElongation(double mutProb)

Method Detail

reproduce

public Individual reproduce(Individual parent,
                            GAParameterSet params)

reproduce

public Individual[] reproduce(Individual[] parents,
                              GAParameterSet params)

Description copied from interface: ReproductionAlgorithm

Reproduces the specified individuals.

Specified by:

reproduce in interface ReproductionAlgorithm

Specified by:

reproduce in class Mutation

Parameters:

parents - The individuals to reproduce. The type of objects in this array must be the class returned by getApplicableClass. The number of objects in this array must be the same as returned by getRequiredNumberOfParents.

params - Experiment parameters.

Returns:

The children - i.e. the result of the reproduction of parents.

getApplicableClass

public java.lang.Class getApplicableClass()

Description copied from interface: ReproductionAlgorithm

Returns the class of individuals handled by this reproduction algorithm.

Specified by:

getApplicableClass in interface ReproductionAlgorithm

Specified by:

getApplicableClass in class Mutation

Returns:

The required type of the array-members in the parameter parents to the method ReproductionAlgorithm.reproduce.