Hierarchy For Package org.jaga.individualRepresentation.proteinLocation

Package Hierarchies:

All Packages

Class Hierarchy

• class java.lang.Object
  • class org.jaga.individualRepresentation.proteinLocation.AminoAcidFactory
  • class org.jaga.individualRepresentation.proteinLocation.AminoAcidPropertyFactory
  • class org.jaga.individualRepresentation.proteinLocation.PolypeptidePattern
  • class org.jaga.individualRepresentation.proteinLocation.PolypeptidePatternItem
    • class org.jaga.individualRepresentation.proteinLocation.AminoAcid
    • class org.jaga.individualRepresentation.proteinLocation.AminoAcidGroup
    • class org.jaga.individualRepresentation.proteinLocation.AminoAcidProperty
    • class org.jaga.individualRepresentation.proteinLocation.SingleGap
  • class org.jaga.individualRepresentation.proteinLocation.Protein
  • class org.jaga.individualRepresentation.proteinLocation.ProteinGroup
  • class org.jaga.individualRepresentation.proteinLocation.ProteinLocationClassifier (implements org.jaga.definitions.Individual)
  • class org.jaga.individualRepresentation.proteinLocation.ProteinLocationClassifierFactory (implements org.jaga.definitions.IndividualsFactory)
  • class org.jaga.individualRepresentation.proteinLocation.SimplifiedFastaFileParser (implements org.jaga.individualRepresentation.proteinLocation.ProteinFileParser)
  • class org.jaga.individualRepresentation.proteinLocation.SubstitutionScoringMatrix
    • class org.jaga.individualRepresentation.proteinLocation.Blosum62

Interface Hierarchy

• interface org.jaga.individualRepresentation.proteinLocation.ProteinFileParser