Uses of Class
org.jaga.individualRepresentation.proteinLocation.ProteinGroup

Packages that use ProteinGroup

org.jaga.exampleApplications.proteinLocation
org.jaga.fitnessEvaluation.proteinLocation
org.jaga.individualRepresentation.proteinLocation

Uses of ProteinGroup in org.jaga.exampleApplications.proteinLocation

Fields in org.jaga.exampleApplications.proteinLocation declared as ProteinGroup

private ProteinGroup	ProgressiveTestGroupSizeHook.allPositives
private ProteinGroup	ProgressiveTestGroupSizeHook.allNegatives
private ProteinGroup	ProgressiveTestGroupSizeHook.testPositives
private ProteinGroup	ProgressiveTestGroupSizeHook.testNegatives

Constructors in org.jaga.exampleApplications.proteinLocation with parameters of type ProteinGroup

ProgressiveTestGroupSizeHook(ProteinGroup allPositives, ProteinGroup allNegatives, ProteinGroup testPositives, ProteinGroup testNegatives, int initialTestSetSize, int testSetSizeDelta, double triggerFitness, double mutationBoost, int boostStartTimeout, int boostStopTimeout, GAParameterSet params)

Uses of ProteinGroup in org.jaga.fitnessEvaluation.proteinLocation

Fields in org.jaga.fitnessEvaluation.proteinLocation declared as ProteinGroup

private ProteinGroup	ProteinLocationTrainer.positiveGroup
private ProteinGroup	ProteinLocationTrainer.negativeGroup

Methods in org.jaga.fitnessEvaluation.proteinLocation that return ProteinGroup

ProteinGroup	ProteinLocationTrainer.getPositiveGroup()
ProteinGroup	ProteinLocationTrainer.getNegativeGroup()

Methods in org.jaga.fitnessEvaluation.proteinLocation with parameters of type ProteinGroup

void	ProteinLocationTrainer.setPositiveGroup(ProteinGroup pGroup)
void	ProteinLocationTrainer.setNegativeGroup(ProteinGroup nGroup)

Constructors in org.jaga.fitnessEvaluation.proteinLocation with parameters of type ProteinGroup

ProteinLocationTrainer(ProteinGroup positiveGroup, ProteinGroup negativeGroup, int minOverlap)

Uses of ProteinGroup in org.jaga.individualRepresentation.proteinLocation

Methods in org.jaga.individualRepresentation.proteinLocation with parameters of type ProteinGroup

void	SimplifiedFastaFileParser.readFromFile(java.lang.String fileName, ProteinGroup callbackAccumulator)
void	ProteinGroup.add(ProteinGroup group)
void	ProteinFileParser.readFromFile(java.lang.String fileName, ProteinGroup callbackAccumulator)