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| Packages that use Protein | |
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| org.jaga.exampleApplications.proteinLocation | |
| org.jaga.individualRepresentation.proteinLocation | |
| Uses of Protein in org.jaga.exampleApplications.proteinLocation |
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| Methods in org.jaga.exampleApplications.proteinLocation with parameters of type Protein | |
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private int |
Locator.analyseResults(Protein prot,
boolean[] match)
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private boolean |
Locator.align(Protein protein,
ProteinLocationClassifier classif)
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private int |
Locator.classifyProtein(Protein prot)
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| Uses of Protein in org.jaga.individualRepresentation.proteinLocation |
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| Methods in org.jaga.individualRepresentation.proteinLocation that return Protein | |
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Protein |
ProteinGroup.getProtein(int index)
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| Methods in org.jaga.individualRepresentation.proteinLocation with parameters of type Protein | |
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void |
ProteinGroup.add(Protein prot)
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private boolean |
ProteinGroup.alignProtein(Protein protein,
PolypeptidePattern pattern,
int minOverlap)
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boolean |
PolypeptidePattern.matches(Protein prot,
int fromLocation)
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