Uses of Class
org.jaga.individualRepresentation.proteinLocation.PolypeptidePatternItem

Packages that use PolypeptidePatternItem

org.jaga.individualRepresentation.proteinLocation
org.jaga.reproduction.proteinLocation

Uses of PolypeptidePatternItem in org.jaga.individualRepresentation.proteinLocation

Subclasses of PolypeptidePatternItem in org.jaga.individualRepresentation.proteinLocation

class	AminoAcid TODO: Complete these comments.
class	AminoAcidGroup TODO: Complete these comments.
class	AminoAcidProperty TODO: Complete these comments.
class	SingleGap TODO: Complete these comments.

Methods in org.jaga.individualRepresentation.proteinLocation that return PolypeptidePatternItem

PolypeptidePatternItem	ProteinLocationClassifierFactory.createRandomPatternItem(GAParameterSet params)
PolypeptidePatternItem	PolypeptidePattern.getItem(int index)

Methods in org.jaga.individualRepresentation.proteinLocation with parameters of type PolypeptidePatternItem

void	PolypeptidePattern.replaceItem(int index, PolypeptidePatternItem item)
void	PolypeptidePattern.insertItem(int index, PolypeptidePatternItem item)
void	PolypeptidePattern.insertItem(PolypeptidePatternItem item)

Uses of PolypeptidePatternItem in org.jaga.reproduction.proteinLocation

Methods in org.jaga.reproduction.proteinLocation that return PolypeptidePatternItem

private PolypeptidePatternItem[]	PolypeptidePatternMutation.mutateItem(AminoAcid aAcid, GAParameterSet params)
private PolypeptidePatternItem[]	PolypeptidePatternMutation.mutateItem(AminoAcidGroup group, GAParameterSet params)
private PolypeptidePatternItem[]	PolypeptidePatternMutation.mutateItem(AminoAcidProperty property, GAParameterSet params)
private PolypeptidePatternItem[]	PolypeptidePatternMutation.mutateItem(SingleGap gap, GAParameterSet params)
private PolypeptidePatternItem[]	PolypeptidePatternMutation.mutatePatternItem(PolypeptidePatternItem item, GAParameterSet params)

Methods in org.jaga.reproduction.proteinLocation with parameters of type PolypeptidePatternItem

private PolypeptidePatternItem[]

PolypeptidePatternMutation.mutatePatternItem(PolypeptidePatternItem item, GAParameterSet params)