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| Packages that use PolypeptidePattern | |
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| org.jaga.individualRepresentation.proteinLocation | |
| Uses of PolypeptidePattern in org.jaga.individualRepresentation.proteinLocation |
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| Fields in org.jaga.individualRepresentation.proteinLocation declared as PolypeptidePattern | |
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private PolypeptidePattern |
ProteinLocationClassifier.pattern
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| Methods in org.jaga.individualRepresentation.proteinLocation that return PolypeptidePattern | |
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PolypeptidePattern |
ProteinLocationClassifierFactory.createRandomPattern(GAParameterSet params)
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PolypeptidePattern |
ProteinLocationClassifierFactory.createRandomPattern(int length,
GAParameterSet params)
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PolypeptidePattern |
ProteinLocationClassifier.getPattern()
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| Methods in org.jaga.individualRepresentation.proteinLocation with parameters of type PolypeptidePattern | |
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Individual |
ProteinLocationClassifierFactory.createSpecificIndividual(PolypeptidePattern init,
GAParameterSet params)
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void |
ProteinLocationClassifier.setPattern(PolypeptidePattern pattern)
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int |
ProteinGroup.align(PolypeptidePattern pattern,
int minOverlap)
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private int |
ProteinGroup.alignInProteins(PolypeptidePattern pattern,
int minOverlap)
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private boolean |
ProteinGroup.alignProtein(Protein protein,
PolypeptidePattern pattern,
int minOverlap)
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private int |
ProteinGroup.alignInSubgroups(PolypeptidePattern pattern,
int minOverlap)
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| Constructors in org.jaga.individualRepresentation.proteinLocation with parameters of type PolypeptidePattern | |
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ProteinLocationClassifier(PolypeptidePattern pattern,
java.lang.String name)
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