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org.jaga.individualRepresentation.proteinLocation
Class SimplifiedFastaFileParser

java.lang.Object
  extended by org.jaga.individualRepresentation.proteinLocation.SimplifiedFastaFileParser
All Implemented Interfaces:
ProteinFileParser

public class SimplifiedFastaFileParser
extends java.lang.Object
implements ProteinFileParser

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:
JAGA public release 1.0 beta
Author:
Greg Paperin (greg@jaga.org)

Constructor Summary
SimplifiedFastaFileParser()
           
 
Method Summary
private  java.lang.String copyReplace(java.lang.String str, char oldChar, char newChar)
           
 void readFromFile(java.lang.String fileName, ProteinGroup callbackAccumulator)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SimplifiedFastaFileParser

public SimplifiedFastaFileParser()
Method Detail

readFromFile

public void readFromFile(java.lang.String fileName,
                         ProteinGroup callbackAccumulator)
                  throws java.io.IOException
Specified by:
readFromFile in interface ProteinFileParser
Throws:
java.io.IOException

copyReplace

private java.lang.String copyReplace(java.lang.String str,
                                     char oldChar,
                                     char newChar)

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