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org.jaga.individualRepresentation.proteinLocation
Class Protein

java.lang.Object
  extended by org.jaga.individualRepresentation.proteinLocation.Protein

public class Protein
extends java.lang.Object

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:
JAGA public release 1.0 beta
Author:
Greg Paperin (greg@jaga.org)

Field Summary
private  java.lang.String name
           
private  AminoAcid[] sequence
           
 
Constructor Summary
Protein()
           
Protein(java.lang.String name, AminoAcid[] sequence)
           
Protein(java.lang.String name, java.lang.String sequence)
           
 
Method Summary
 int getLength()
           
 java.lang.String getName()
           
 AminoAcid getResidue(int index)
           
 AminoAcid[] getSequence()
           
 AminoAcid[] getSequenceReferencePerformanceHack()
           
 java.lang.String getSequenceString()
           
 java.lang.String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

name

private java.lang.String name

sequence

private AminoAcid[] sequence
Constructor Detail

Protein

public Protein()

Protein

public Protein(java.lang.String name,
               java.lang.String sequence)

Protein

public Protein(java.lang.String name,
               AminoAcid[] sequence)
Method Detail

getName

public java.lang.String getName()

getSequenceString

public java.lang.String getSequenceString()

getSequence

public AminoAcid[] getSequence()

getSequenceReferencePerformanceHack

public AminoAcid[] getSequenceReferencePerformanceHack()

getResidue

public AminoAcid getResidue(int index)

getLength

public int getLength()

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

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