org.jaga.individualRepresentation.proteinLocation
Class Protein

java.lang.Object
  org.jaga.individualRepresentation.proteinLocation.Protein

public class Protein

extends java.lang.Object

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:

JAGA public release 1.0 beta

Author:

Greg Paperin (greg@jaga.org)

Field Summary

private java.lang.String	name
private AminoAcid[]	sequence

Constructor Summary

Protein()

Protein(java.lang.String name, AminoAcid[] sequence)

Protein(java.lang.String name, java.lang.String sequence)

Method Summary

int	getLength()
java.lang.String	getName()
AminoAcid	getResidue(int index)
AminoAcid[]	getSequence()
AminoAcid[]	getSequenceReferencePerformanceHack()
java.lang.String	getSequenceString()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

name

private java.lang.String name

sequence

private AminoAcid[] sequence

Constructor Detail

Protein

public Protein()

Protein

public Protein(java.lang.String name,
               java.lang.String sequence)

Protein

public Protein(java.lang.String name,
               AminoAcid[] sequence)

Method Detail

getName

public java.lang.String getName()

getSequenceString

public java.lang.String getSequenceString()

getSequence

public AminoAcid[] getSequence()

getSequenceReferencePerformanceHack

public AminoAcid[] getSequenceReferencePerformanceHack()

getResidue

public AminoAcid getResidue(int index)

getLength

public int getLength()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object