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org.jaga.individualRepresentation.proteinLocation
Class AminoAcidProperty

java.lang.Object
  extended by org.jaga.individualRepresentation.proteinLocation.PolypeptidePatternItem
      extended by org.jaga.individualRepresentation.proteinLocation.AminoAcidProperty

public class AminoAcidProperty
extends PolypeptidePatternItem

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:
JAGA public release 1.0 beta
Author:
Greg Paperin (greg@jaga.org)

Field Summary
static int Aliphatic
           
static int Aromatic
           
static int Hydrophobic
           
private  java.lang.String name
           
static int Negative
           
static int Polar
           
static int Positive
           
private  int property
           
static int Small
           
static int Tiny
           
 
Constructor Summary
private AminoAcidProperty()
           
(package private) AminoAcidProperty(int property)
           
 
Method Summary
 boolean doesntMatch(AminoAcid aminoAcid)
           
 int getProperty()
           
 java.lang.String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

Small

public static final int Small
See Also:
Constant Field Values

Hydrophobic

public static final int Hydrophobic
See Also:
Constant Field Values

Polar

public static final int Polar
See Also:
Constant Field Values

Positive

public static final int Positive
See Also:
Constant Field Values

Negative

public static final int Negative
See Also:
Constant Field Values

Tiny

public static final int Tiny
See Also:
Constant Field Values

Aliphatic

public static final int Aliphatic
See Also:
Constant Field Values

Aromatic

public static final int Aromatic
See Also:
Constant Field Values

property

private int property

name

private java.lang.String name
Constructor Detail

AminoAcidProperty

private AminoAcidProperty()

AminoAcidProperty

AminoAcidProperty(int property)
Method Detail

getProperty

public int getProperty()

toString

public java.lang.String toString()
Specified by:
toString in class PolypeptidePatternItem

doesntMatch

public boolean doesntMatch(AminoAcid aminoAcid)
Specified by:
doesntMatch in class PolypeptidePatternItem

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