org.jaga.individualRepresentation.proteinLocation
Class AminoAcidProperty

java.lang.Object
  org.jaga.individualRepresentation.proteinLocation.PolypeptidePatternItem
      org.jaga.individualRepresentation.proteinLocation.AminoAcidProperty

public class AminoAcidProperty

extends PolypeptidePatternItem

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:

JAGA public release 1.0 beta

Author:

Greg Paperin (greg@jaga.org)

Field Summary

static int	Aliphatic
static int	Aromatic
static int	Hydrophobic
private java.lang.String	name
static int	Negative
static int	Polar
static int	Positive
private int	property
static int	Small
static int	Tiny

Constructor Summary

private	AminoAcidProperty()
(package private)	AminoAcidProperty(int property)

Method Summary

boolean	doesntMatch(AminoAcid aminoAcid)
int	getProperty()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

Small

public static final int Small

See Also:

Constant Field Values

Hydrophobic

public static final int Hydrophobic

See Also:

Constant Field Values

Polar

public static final int Polar

See Also:

Constant Field Values

Positive

public static final int Positive

See Also:

Constant Field Values

Negative

public static final int Negative

See Also:

Constant Field Values

Tiny

public static final int Tiny

See Also:

Constant Field Values

Aliphatic

public static final int Aliphatic

See Also:

Constant Field Values

Aromatic

public static final int Aromatic

See Also:

Constant Field Values

property

private int property

name

private java.lang.String name

Constructor Detail

AminoAcidProperty

private AminoAcidProperty()

AminoAcidProperty

AminoAcidProperty(int property)

Method Detail

getProperty

public int getProperty()

toString

public java.lang.String toString()

Specified by:

toString in class PolypeptidePatternItem

doesntMatch

public boolean doesntMatch(AminoAcid aminoAcid)

Specified by:

doesntMatch in class PolypeptidePatternItem