org.jaga.individualRepresentation.proteinLocation
Class AminoAcid

java.lang.Object
  org.jaga.individualRepresentation.proteinLocation.PolypeptidePatternItem
      org.jaga.individualRepresentation.proteinLocation.AminoAcid

public class AminoAcid

extends PolypeptidePatternItem

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:

JAGA public release 1.0 beta

Author:

Greg Paperin (greg@jaga.org)

Field Summary

private java.lang.String	code
private java.lang.String	name
private int	properties

Constructor Summary

private	AminoAcid()
(package private)	AminoAcid(java.lang.String name, java.lang.String code, int properties)

Method Summary

boolean	doesntMatch(AminoAcid aminoAcid)
java.lang.String	getCode()
java.lang.String	getName()
int	getProperties()
boolean	isAliphatic()
boolean	isAromatic()
boolean	isHydrophobic()
boolean	isNegative()
boolean	isPolar()
boolean	isPositive()
boolean	isSmall()
boolean	isTiny()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

name

private java.lang.String name

code

private java.lang.String code

properties

private int properties

Constructor Detail

AminoAcid

private AminoAcid()

AminoAcid

AminoAcid(java.lang.String name,
          java.lang.String code,
          int properties)

Method Detail

doesntMatch

public boolean doesntMatch(AminoAcid aminoAcid)

Specified by:

doesntMatch in class PolypeptidePatternItem

getName

public java.lang.String getName()

getCode

public java.lang.String getCode()

toString

public java.lang.String toString()

Specified by:

toString in class PolypeptidePatternItem

getProperties

public int getProperties()

isPolar

public boolean isPolar()

isSmall

public boolean isSmall()

isHydrophobic

public boolean isHydrophobic()

isAliphatic

public boolean isAliphatic()

isAromatic

public boolean isAromatic()

isNegative

public boolean isNegative()

isPositive

public boolean isPositive()

isTiny

public boolean isTiny()