org.jaga.exampleApplications.proteinLocation
Class DataSplitter

java.lang.Object
  org.jaga.exampleApplications.proteinLocation.DataSplitter

public class DataSplitter

extends java.lang.Object

TODO: Complete these comments.

Project: JAGA - Java API for Genetic Algorithms.

Company: University College London and JAGA.Org (http://www.jaga.org).

Copyright: (c) 2004 by G. Paperin.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, ONLY if you include a note of the original author(s) in any redistributed/modified copy.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA or see http://www.gnu.org/licenses/gpl.html

Version:

JAGA public release 1.0 beta

Author:

Greg Paperin (greg@jaga.org)

Nested Class Summary

(package private) class

DataSplitter.Protein

Field Summary

static java.lang.String	dataDir
static int	outputLineLen
private java.util.ArrayList[]	prots
static java.lang.String[]	sourceFiles
static double	testSetProportion
static java.lang.String[]	trainDestFiles
static java.lang.String[]	validDestFiles

Constructor Summary

DataSplitter()

Method Summary

void	exec()
private void	loadProtein(java.lang.String fname, java.util.ArrayList protList)
private void	loadProteins()
static void	main(java.lang.String[] args)
private void	randomise()
private void	saveProtein(DataSplitter.Protein[] protList, java.lang.String fname)
private void	saveProteins()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

testSetProportion

public static final double testSetProportion

See Also:

Constant Field Values

outputLineLen

public static final int outputLineLen

See Also:

Constant Field Values

dataDir

public static final java.lang.String dataDir

See Also:

Constant Field Values

sourceFiles

public static final java.lang.String[] sourceFiles

trainDestFiles

public static final java.lang.String[] trainDestFiles

validDestFiles

public static final java.lang.String[] validDestFiles

prots

private java.util.ArrayList[] prots

Constructor Detail

DataSplitter

public DataSplitter()

Method Detail

loadProtein

private void loadProtein(java.lang.String fname,
                         java.util.ArrayList protList)
                  throws java.io.IOException

Throws:

java.io.IOException

loadProteins

private void loadProteins()
                   throws java.io.IOException

Throws:

java.io.IOException

randomise

private void randomise()

saveProtein

private void saveProtein(DataSplitter.Protein[] protList,
                         java.lang.String fname)
                  throws java.io.IOException

Throws:

java.io.IOException

saveProteins

private void saveProteins()
                   throws java.io.IOException

Throws:

java.io.IOException

exec

public void exec()

main

public static void main(java.lang.String[] args)