Uses of Interface
org.jaga.definitions.Population

Packages that use Population

org.jaga.definitions
org.jaga.exampleApplications
org.jaga.exampleApplications.proteinLocation
org.jaga.fitnessEvaluation.largerNumbers
org.jaga.fitnessEvaluation.multiplexer
org.jaga.fitnessEvaluation.proteinLocation
org.jaga.hooks
org.jaga.masterAlgorithm
org.jaga.selection
org.jaga.util

Uses of Population in org.jaga.definitions

Methods in org.jaga.definitions with parameters of type Population

Individual	SelectionAlgorithm.select(Population population, int age, GAParameterSet params) Selects an individual from the specified population according to the fitness.
Individual[]	SelectionAlgorithm.select(Population population, int howMany, int age, GAParameterSet params) Selects a spacified number of individuals from the population according to their fitness.
Fitness	FitnessEvaluationAlgorithm.evaluateFitness(Individual individual, int age, Population population, GAParameterSet params) Evaluates the fitness of a spscified individual.

Uses of Population in org.jaga.exampleApplications

Methods in org.jaga.exampleApplications with parameters of type Population

Fitness	Example2Fitness.evaluateFitness(Individual individual, int age, Population population, GAParameterSet params)
Fitness	Example1Fitness.evaluateFitness(Individual individual, int age, Population population, GAParameterSet params)

Uses of Population in org.jaga.exampleApplications.proteinLocation

Methods in org.jaga.exampleApplications.proteinLocation with parameters of type Population

void	ProgressiveTestGroupSizeHook.foundNewResult(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	ProgressiveTestGroupSizeHook.generationChanged(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)

Uses of Population in org.jaga.fitnessEvaluation.largerNumbers

Methods in org.jaga.fitnessEvaluation.largerNumbers with parameters of type Population

Fitness

LargerDecimals.evaluateFitness(Individual individual, int age, Population population, GAParameterSet params)

Uses of Population in org.jaga.fitnessEvaluation.multiplexer

Methods in org.jaga.fitnessEvaluation.multiplexer with parameters of type Population

Fitness

MultiplexerFitness.evaluateFitness(Individual individual, int age, Population population, GAParameterSet params)

Uses of Population in org.jaga.fitnessEvaluation.proteinLocation

Methods in org.jaga.fitnessEvaluation.proteinLocation with parameters of type Population

Fitness

ProteinLocationTrainer.evaluateFitness(Individual individual, int age, Population population, GAParameterSet params)

Uses of Population in org.jaga.hooks

Methods in org.jaga.hooks with parameters of type Population

void	SimpleGAHook.initialisationDone(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	SimpleGAHook.foundNewResult(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	SimpleGAHook.generationChanged(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	SimpleGAHook.terminationConditionApplies(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	SimpleGAHook.selectedForReproduction(SimpleGA caller, Individual[] selectedParents, Population pop, int age, GAResult result, GAParameterSet params)
void	SimpleGAHook.reproduced(SimpleGA caller, Individual[] children, Individual[] parents, Population pop, int age, GAResult result, GAParameterSet params)
void	SimpleGAHook.fitnessCalculated(SimpleGA caller, Individual updatedIndividual, Population pop, int age, GAParameterSet params)
private void	DebugHook.printPopulation(Population pop, int age)
void	DebugHook.initialisationDone(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	DebugHook.foundNewResult(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	DebugHook.generationChanged(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet paramss)
void	DebugHook.terminationConditionApplies(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	DebugHook.selectedForReproduction(SimpleGA caller, Individual[] selectedParents, Population pop, int age, GAResult result, GAParameterSet params)
void	DebugHook.reproduced(SimpleGA caller, Individual[] children, Individual[] parents, Population pop, int age, GAResult result, GAParameterSet params)
void	DebugHook.fitnessCalculated(SimpleGA caller, Individual updatedIndividual, Population pop, int age, GAParameterSet params)
void	BetterResultHook.generationChanged(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet paramss)
void	BetterResultHook.selectedForReproduction(SimpleGA caller, Individual[] selectedParents, Population pop, int age, GAResult result, GAParameterSet params)
void	BetterResultHook.reproduced(SimpleGA caller, Individual[] children, Individual[] parents, Population pop, int age, GAResult result, GAParameterSet params)
void	BetterResultHook.fitnessCalculated(SimpleGA caller, Individual updatedIndividual, Population pop, int age, GAParameterSet params)
private void	AnalysisHook.updatePopulation(Population pop, int age, GAResult result)
void	AnalysisHook.initialisationDone(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	AnalysisHook.populationReinitialised(Population pop, int age, GAResult result, GAParameterSet params)
void	AnalysisHook.foundNewResult(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	AnalysisHook.generationChanged(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet paramss)
void	AnalysisHook.terminationConditionApplies(SimpleGA caller, Population pop, int age, GAResult result, GAParameterSet params)
void	AnalysisHook.selectedForReproduction(SimpleGA caller, Individual[] selectedParents, Population pop, int age, GAResult result, GAParameterSet params)
void	AnalysisHook.reproduced(SimpleGA caller, Individual[] children, Individual[] parents, Population pop, int age, GAResult result, GAParameterSet params)
void	AnalysisHook.fitnessCalculated(SimpleGA caller, Individual updatedIndividual, Population pop, int age, GAParameterSet params)

Uses of Population in org.jaga.masterAlgorithm

Methods in org.jaga.masterAlgorithm that return Population

protected Population	SimpleGA.generateNextPopulation(Population oldPop, int age, GAResult result, GAParameterSet params)
protected Population	SimpleGA.createInitialPopulation(GAParameterSet params)
protected Population	SimpleGA.createEmptyPopulation(GAParameterSet params)
protected Population	InitialPopulationGA.createInitialPopulation(GAParameterSet params)
protected Population	ElitistGA.generateNextPopulation(Population oldPop, int age, GAResult result, GAParameterSet params)

Methods in org.jaga.masterAlgorithm with parameters of type Population

protected Population	SimpleGA.generateNextPopulation(Population oldPop, int age, GAResult result, GAParameterSet params)
protected boolean	SimpleGA.checkForBetterResult(GAResult oldResult, Population newPop, GAParameterSet params)
protected boolean	SimpleGA.terminationConditionApplies(Population pop, int genNum, GAResult result, GAParameterSet params)
protected Individual[]	SimpleGA.selectForReproduction(Population pop, int age, GAParameterSet params)
protected void	SimpleGA.updateIndividualFitness(Individual indiv, Population pop, int genNum, GAParameterSet params)
protected void	SimpleGA.notifyInitialisationDone(Population pop, int age, GAResult result, GAParameterSet params)
protected void	SimpleGA.notifyFoundNewResult(Population pop, int age, GAResult result, GAParameterSet params)
protected void	SimpleGA.notifyGenerationChanged(Population pop, int age, GAResult result, GAParameterSet params)
protected void	SimpleGA.notifyTerminationConditionApplies(Population pop, int age, GAResult result, GAParameterSet params)
protected void	SimpleGA.notifySelectedForReproduction(Individual[] selectedParents, Population pop, int age, GAResult result, GAParameterSet params)
protected void	SimpleGA.notifyReproduced(Individual[] children, Individual[] parents, Population pop, int age, GAResult result, GAParameterSet params)
protected void	SimpleGA.updateFitnessCalculated(Individual updated, Population pop, int age, GAParameterSet params)
protected Population	ElitistGA.generateNextPopulation(Population oldPop, int age, GAResult result, GAParameterSet params)

Uses of Population in org.jaga.selection

Methods in org.jaga.selection with parameters of type Population

Individual	TwoTournamentProbabalisticSelection.select(Population population, int age, GAParameterSet params)
Individual[]	TwoTournamentProbabalisticSelection.select(Population population, int howMany, int age, GAParameterSet params)
Individual	TournamentSelection.select(Population population, int age, GAParameterSet params)
Individual[]	TournamentSelection.select(Population population, int howMany, int age, GAParameterSet params)
Individual	RouletteWheelSelection.select(Population population, int age, GAParameterSet params)
Individual[]	RouletteWheelSelection.select(Population population, int howMany, int age, GAParameterSet params)
private double	RouletteWheelSelection.calculateCumulativeFitness(Population population)
private Individual	RouletteWheelSelection.spinRoulette(double cumSum, Population pop, GAParameterSet params)

Uses of Population in org.jaga.util

Classes in org.jaga.util that implement Population

class

SimpleCollectionOfIndividuals TODO: Complete these comments.