A B C D E F G H I J K L M N O P Q R S T U V X Y

I

IFNode - class org.jaga.reproduction.booleanFormulas.nodes.IFNode.

TODO: Complete these comments.

IFNode() - Constructor for class org.jaga.reproduction.booleanFormulas.nodes.IFNode

IMPLNode - class org.jaga.reproduction.booleanFormulas.nodes.IMPLNode.

TODO: Complete these comments.

IMPLNode() - Constructor for class org.jaga.reproduction.booleanFormulas.nodes.IMPLNode

Individual - interface org.jaga.definitions.Individual.

Basis for all classes representing an individual, i.e.

IndividualsFactory - interface org.jaga.definitions.IndividualsFactory.

Basis for individual factories.

InitialPopulationGA - class org.jaga.masterAlgorithm.InitialPopulationGA.

TODO: Complete these comments.

InitialPopulationGA() - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(double, double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(GAParameterSet, double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(GAParameterSet, double, double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(Object[]) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(Object[], double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(Object[], double, double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(Object[], GAParameterSet, double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

InitialPopulationGA(Object[], GAParameterSet, double, double) - Constructor for class org.jaga.masterAlgorithm.InitialPopulationGA

individualSize - Variable in class org.jaga.individualRepresentation.greycodedNumbers.NDecimalsIndividualSimpleFactory

individuals - Variable in class org.jaga.util.SimpleCollectionOfIndividuals

initChildrenArray() - Method in class org.jaga.reproduction.booleanFormulas.nodes.OperatorNode

initData - Variable in class org.jaga.masterAlgorithm.InitialPopulationGA

initTests(Multiplexer) - Method in class org.jaga.fitnessEvaluation.multiplexer.MultiplexerFitness

initialisationDone(SimpleGA, Population, int, GAResult, GAParameterSet) - Method in class org.jaga.hooks.AnalysisHook

initialisationDone(SimpleGA, Population, int, GAResult, GAParameterSet) - Method in class org.jaga.hooks.DebugHook

initialisationDone(SimpleGA, Population, int, GAResult, GAParameterSet) - Method in class org.jaga.hooks.SimpleGAHook

insertItem(int, PolypeptidePatternItem) - Method in class org.jaga.individualRepresentation.proteinLocation.PolypeptidePattern

insertItem(PolypeptidePatternItem) - Method in class org.jaga.individualRepresentation.proteinLocation.PolypeptidePattern

insertReproductionAlgorithm(int, ReproductionAlgorithm) - Method in class org.jaga.reproduction.CombinedReproductionAlgorithm

isAliphatic() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isAnalyseBestFitness() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseGenAge() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseGenAverageFit() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseGenDump() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseGenFitStdDeviation() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseGenMaxFit() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseGenMinFit() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseRunTime() - Method in class org.jaga.hooks.AnalysisHook

isAnalyseTotalFitEvals() - Method in class org.jaga.hooks.AnalysisHook

isAromatic() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isBetter(Fitness) - Method in interface org.jaga.definitions.Fitness

Compares this fitness to the specified fitness.

isBetter(Fitness) - Method in class org.jaga.selection.AbsoluteFitness

isHydrophobic() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isNegative() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isPlotGraph() - Method in class org.jaga.hooks.AnalysisHook

isPolar() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isPositive() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isSmall() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isTiny() - Method in class org.jaga.individualRepresentation.proteinLocation.AminoAcid

isViewUpdated() - Method in class org.jaga.hooks.AnalysisHook

isWorse(Fitness) - Method in interface org.jaga.definitions.Fitness

Compares this fitness to the specified fitness.

isWorse(Fitness) - Method in class org.jaga.selection.AbsoluteFitness

items - Variable in class org.jaga.individualRepresentation.proteinLocation.PolypeptidePattern